263721 LMF1Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
263721	chr_10	LMF1	921425	923977	+	LMF1

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446914	Thaps263721.6, Thaps263721.1, Thaps263721.2, Thaps263721.5, Thaps263721.4, Thaps263721.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0246

Most Highly Correlated Transcripts

bd446 (bd446) HrpA 0.9301	bd392 (bd392) DEXDc 0.9165	267979 HCO3_cotransp superfamily 0.8907	22627 hypothetical protein 0.8856	8334 hypothetical protein 0.8775	268443 SAICAR_synt_Sc 0.8775
262348 53EXOc 0.8748	31932 hypothetical protein 0.8744	269660 hypothetical protein 0.8724	6642 hypothetical protein 0.8714

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
LMF1 superfamily		Lipase maturation factor; This family of transmembrane proteins includes the lipase maturation...	-	336.965	7.64E-109	293 - 692	superfamily	253900
LMF1 superfamily		Lipase maturation factor; This family of transmembrane proteins includes the lipase maturation...	-	336.965	7.64E-109	293 - 692	superfamily	253900

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_32176	PHATRDRAFT_32176	241536	Not available	114709	Not available	Not available	335634

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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