263880 PRK12267
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263880 chr_12 PRK12267 345307 347799 - PRK12267

Synonyms

NCBI ID Ensembl Genomes exon ID
7445793 Thaps263880.3, Thaps263880.2, Thaps263880.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0241

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0233
 0.34

Most Highly Correlated Transcripts

7151

hypothetical protein
0.9175

354

PTZ00424
0.9148

bd1709

(bd1709) NA
0.906

42194

PTZ00184
0.9031

bd96

(bd96) eIF-3_zeta
0.8964

31150

rpsI
0.8819

23356

Gst
0.8819

22508

hypothetical protein
0.8793

4330

DUF2256
0.8767

25794

hypothetical protein
0.8746

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MetRS_core catalytic core domain of methioninyl-tRNA synthetases; Methionine tRNA synthetase (MetRS) catalytic... cl00015 393.436 1.82E-130 51 - 398 specific 173907
nt_trans superfamily nucleotidyl transferase superfamily; nt_trans (nucleotidyl transferase) This superfamily includes... - 393.436 1.82E-130 51 - 398 superfamily 260139
tRNA_bind_EMAP-II_like tRNA-binding-domain-containing EMAP2-like proteins. This family contains a diverse fraction of tRNA... cl00320 162.783 3.64E-47 613 - 716 specific 239198
tRNA_bindingDomain superfamily The tRNA binding domain is also known as the Myf domain in literature. This domain is found in a... - 162.783 3.64E-47 613 - 716 superfamily 260352
Anticodon_Ia_like superfamily Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; This domain is... - 102.183 3.13E-25 407 - 529 superfamily 264512
PRK12267 methionyl-tRNA synthetase; Reviewed - 629.524 0 46 - 715 multi-dom 237028

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 417170 Not available Not available 250104

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000049 GO:0004812 GO:0016876 -

GO:0000049

tRNA binding

Details: 
Interacting selectively and non-covalently with transfer RNA.
GO Category: 
MF

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0016876

ligase activity, forming aminoacyl-tRNA and related compounds

Details: 
Catalysis of the joining of an amino acid and a nucleic acid (usually tRNA) or poly(ribitol phosphate), with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. The reaction forms an aminoacyl-tRNA or a related compound.
GO Category: 
MF

Add comment

Log in to post comments