42194 PTZ00184
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
42194 chr_13 PTZ00184 286192 287400 - PTZ00184

Synonyms

NCBI ID Ensembl Genomes exon ID
7453001 Thaps42194.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0274

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0196
 0.36

Most Highly Correlated Transcripts

7151

hypothetical protein
0.9098

263880

PRK12267
0.9031

21491

hypothetical protein
0.8937

25475

hypothetical protein
0.8909

35194

hypothetical protein
0.8843

268449

Thioredoxin_like superfamily
0.8803

269925

AAA_12 superfamily
0.8725

32108

hypothetical protein
0.8707

4517

hypothetical protein
0.87

22276

Gar1
0.8699

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor... cl00047 63.499 9.92E-13 2 - 80 specific 237999
CAP_ED superfamily effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor... - 63.499 9.92E-13 2 - 80 superfamily 260155
EFh superfamily EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal... - 59.8689 9.70E-12 215 - 279 superfamily 238008
EFh superfamily EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal... - 59.8689 9.70E-12 215 - 279 superfamily 238008
PTZ00184 calmodulin; Provisional - 72.1014 1.93E-15 204 - 347 multi-dom 185504

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49634 PHATRDRAFT_49634 201035 250452 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Phosphatidylinositol signaling system map04070

GO Terms

GO:0005509 -

GO:0005509

calcium ion binding

Details: 
Interacting selectively and non-covalently with calcium ions (Ca2+).
GO Category: 
MF

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