264016 ATPase-IIB_Ca
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264016 chr_13 ATPase-IIB_Ca 557276 560873 - ATPase-IIB_Ca

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0198

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0048
 0.39

Most Highly Correlated Transcripts

270222

0.9315

23586

hypothetical protein
0.8804

35136

NA
0.8644

267979

HCO3_cotransp superfamily
0.8586

10340

hypothetical protein
0.8521

31543

AAA
0.8507

16613

S_TKc
0.8486

22095

DUF726 superfamily
0.846

40200

TRX_reduct
0.8452

10055

hypothetical protein
0.8444

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
E1-E2_ATPase superfamily E1-E2 ATPase; E1-E2 ATPase. - 181.228 2.47E-51 189 - 433 superfamily 249606
E1-E2_ATPase superfamily E1-E2 ATPase; E1-E2 ATPase. - 181.228 2.47E-51 189 - 433 superfamily 249606
Cation_ATPase_C superfamily Cation transporting ATPase, C-terminus; Members of this families are involved in Na+/K+, H+/K+, Ca... - 149.689 7.67E-41 885 - 1060 superfamily 250058
Cation_ATPase_C superfamily Cation transporting ATPase, C-terminus; Members of this families are involved in Na+/K+, H+/K+, Ca... - 149.689 7.67E-41 885 - 1060 superfamily 250058
Hydrolase_like2 superfamily Putative hydrolase of sodium-potassium ATPase alpha subunit; This is a putative hydrolase of the... - 66.8685 4.58E-13 494 - 590 superfamily 257602
Hydrolase_like2 superfamily Putative hydrolase of sodium-potassium ATPase alpha subunit; This is a putative hydrolase of the... - 66.8685 4.58E-13 494 - 590 superfamily 257602
ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase; This model describes the P-type ATPase... - 798.213 0 73 - 1063 multi-dom 188151

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54778 PHATRDRAFT_54778 211820 237607 466567 Cre09.g388850.t1.1 AT2G41560.1 520956

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0006812 GO:0015662 GO:0016020 GO:0003824 GO:0008152 GO:0005388 GO:0005509 GO:0006816 GO:0015085 GO:0016820 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006812

cation transport

Details: 
The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0015662

ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism

Details: 
Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O = ADP + phosphate, to directly drive the transport of ions across a membrane. The reaction is characterized by the transient formation of a high-energy aspartyl-phosphoryl-enzyme intermediate.
GO Category: 
MF

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0005388

calcium-transporting ATPase activity

Details: 
Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans).
GO Category: 
MF

GO:0005509

calcium ion binding

Details: 
Interacting selectively and non-covalently with calcium ions (Ca2+).
GO Category: 
MF

GO:0006816

calcium ion transport

Details: 
The directed movement of calcium (Ca) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0015085

calcium ion transmembrane transporter activity

Details: 
Catalysis of the transfer of calcium (Ca) ions from one side of a membrane to the other.
GO Category: 
MF

GO:0016820

hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances

Details: 
Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane.
GO Category: 
MF

Add comment

Log in to post comments