264090 AAA_12Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
264090	chr_13	AAA_12	1029012	1030294	+	AAA_12

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450807	Thaps264090.3, Thaps264090.4, Thaps264090.2, Thaps264090.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0230

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0188	0.22	16 11

Most Highly Correlated Transcripts

14890 Cupin_8 superfamily 0.916	34782 HrpA 0.9121	21802 hypothetical protein 0.9063	23199 WD40 superfamily 0.8967	263644 (TopoII_2) PLN03128 0.8963	268486 Glyco_transf_22 superfamily 0.8916
23096 hypothetical protein 0.8905	10533 hypothetical protein 0.8896	24598 Peptidase_C19 0.8857	22441 hypothetical protein 0.8817

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA_12 superfamily		AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	-	224.35	7.47E-72	92 - 305	superfamily	257490
AAA_12 superfamily		AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	-	224.35	7.47E-72	92 - 305	superfamily	257490
COG1112		Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and...	-	179.002	2.25E-50	14 - 321	multi-dom	224037

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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