264177 P4Hc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264177 chr_14 P4Hc 531695 533237 + P4Hc

Synonyms

NCBI ID Ensembl Genomes exon ID
7451246 Thaps264177.2, Thaps264177.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0208

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0202
 0.30

Most Highly Correlated Transcripts

18462

EMP24_GP25L
0.9363

30701

PRK05279
0.935

37934

GRX_PICOT_like
0.9338

4292

hypothetical protein
0.9264

261982

(ACB1) ACBP
0.922

39299

(ARF3) Arf1_5_like
0.9205

23516

hypothetical protein
0.9182

9417

DUF1777
0.9178

21249

hypothetical protein
0.9149

268192

Zip superfamily
0.9146

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
P4Hc Prolyl 4-hydroxylase alpha subunit homologues; Mammalian enzymes catalyse hydroxylation of collagen... cl17304 82.4358 1.76E-18 342 - 491 specific 214780
2OG-FeII_Oxy_3 superfamily 2OG-Fe(II) oxygenase superfamily; This family contains members of the 2-oxoglutarate (2OG) and Fe(... - 82.4358 1.76E-18 342 - 491 superfamily 266616

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_33329 PHATR_33329 271082 239293 440074 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0016706 GO:0019538 GO:0004656 GO:0016222 -

GO:0016706

oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Details: 
Catalysis of the reaction: A + 2-oxoglutarate + O2 = B + succinate + CO2. This is an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from 2-oxoglutarate and one other donor, and one atom of oxygen is incorporated into each donor.
GO Category: 
MF

GO:0019538

protein metabolic process

Details: 
The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification.
GO Category: 
BP

GO:0004656

procollagen-proline 4-dioxygenase activity

Details: 
Catalysis of the reaction: procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2.
GO Category: 
MF

GO:0016222

procollagen-proline 4-dioxygenase complex

Details: 
A protein complex that catalyzes the formation of procollagen trans-4-hydroxy-L-proline and succinate from procollagen L-proline and 2-oxoglutarate, requiring Fe2+ and ascorbate. Contains two alpha subunits that contribute to most parts of the catalytic sites, and two beta subunits that are identical to protein-disulfide isomerase.
GO Category: 
CC

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