39299 (ARF3) Arf1_5_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
39299 chr_1 (ARF3) Arf1_5_like 2680678 2682144 + Arf1_5_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7449758 Thaps39299.1, Thaps39299.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0210

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0238
 0.33

Most Highly Correlated Transcripts

41291

(CAM1) PTZ00184
0.9492

268840

CBS_pair_10
0.9488

21249

hypothetical protein
0.9475

39278

ATP-synt_C
0.9344

39497

Sar1
0.9297

18462

EMP24_GP25L
0.9256

22673

NA
0.9252

29244

cyclophilin_ABH_like
0.9219

25068

hypothetical protein
0.9215

bd1857

(bd1857) DnaJ
0.9215

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Arf1_5_like ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5); The Arf1-Arf5-like subfamily... cl17170 335.531 1.41E-118 18 - 178 specific 206717
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 335.531 1.41E-118 18 - 178 superfamily 266525
COG1100 GTPase SAR1 and related small G proteins [General function prediction only] - 115.828 5.54E-32 13 - 138 multi-dom 224025

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_43251 PHATRDRAFT_43251 177131 251778 79310 Cre12.g486250.t1.2 AT1G10630.1 354140

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005525 GO:0007264 GO:0015031 GO:0006886 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0007264

small GTPase mediated signal transduction

Details: 
Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
GO Category: 
BP

GO:0015031

protein transport

Details: 
The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0006886

intracellular protein transport

Details: 
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO Category: 
BP

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