264316 PLN02826
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264316 chr_15 PLN02826 540949 542739 - PLN02826

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0178

Most Highly Correlated Transcripts

263610

COG3899
0.894

23029

hypothetical protein
0.8931

24076

LRR_RI superfamily
0.8926

12076

EPL1 superfamily
0.8873

261357

NAD_binding_8 superfamily
0.8812

8509

hypothetical protein
0.8754

11613

hypothetical protein
0.8747

28410

PldB
0.8743

10397

hypothetical protein
0.8716

10695

EVE superfamily
0.8691

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to... cl17186 460.813 2.16E-161 52 - 380 specific 240089
TIM_phosphate_binding superfamily TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an... - 460.813 2.16E-161 52 - 380 superfamily 266538
PLN02826 dihydroorotate dehydrogenase - 557.043 0 23 - 401 multi-dom 178421

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_15423 PHATRDRAFT_15423 182199 202722 Not available Cre03.g199423.t1.1 AT5G23300.1 557375

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0004152 GO:0006207 GO:0004158 GO:0016020 -

GO:0004152

dihydroorotate dehydrogenase activity

Details: 
Catalysis of the reaction: (S)-dihydroorotate + A = AH(2) + orotate.
GO Category: 
MF

GO:0006207

'de novo' pyrimidine nucleobase biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors.
GO Category: 
BP

GO:0004158

dihydroorotate oxidase activity

Details: 
Catalysis of the reaction: (S)-dihydroorotate + O(2) = H(2)O(2) + orotate.
GO Category: 
MF

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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