264421 3a01204
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264421 chr_17 3a01204 134180 138572 + 3a01204

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0010

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0064
 0.41

Most Highly Correlated Transcripts

bd463

(bd463) Aa_trans superfamily
0.9507

bd1893

(bd1893) NA
0.9161

bd760

(bd760) ZnMc superfamily
0.9156

4567

hypothetical protein
0.8819

9569

hypothetical protein
0.8799

5671

hypothetical protein
0.862

24124

hypothetical protein
0.8613

31316

pyruv_ox_red
0.8576

bd1809

(bd1809) ZnMc_pappalysin_like
0.8528

37810

GMPK
0.8501

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 169.751 2.02E-47 19 - 238 superfamily 266551
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 169.751 2.02E-47 19 - 238 superfamily 266551
ABC2_membrane ABC-2 type transporter; ABC-2 type transporter. cl17235 121.981 7.53E-31 334 - 544 specific 250332
ABC2_membrane superfamily ABC-2 type transporter; ABC-2 type transporter. - 121.981 7.53E-31 334 - 544 superfamily 266576
ABC2_membrane ABC-2 type transporter; ABC-2 type transporter. cl17235 121.981 7.53E-31 334 - 544 specific 250332
ABC2_membrane superfamily ABC-2 type transporter; ABC-2 type transporter. - 121.981 7.53E-31 334 - 544 superfamily 266576
3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]. - 233.015 2.68E-65 25 - 607 multi-dom 233207
PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional - 63.268 4.51E-11 654 - 904 multi-dom 182561

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0016887 GO:0000166 GO:0017111 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

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