26457 (GR) PRK06116
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
26457 chr_20 (GR) PRK06116 45400 47667 + PRK06116

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0066

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0031
 0.36

Most Highly Correlated Transcripts

bd258

(bd258) HU
0.8912

270222

0.8897

bd1652

(bd1652) ABC_ATPase superfamily
0.8582

25177

TLC superfamily
0.8401

5851

hypothetical protein
0.83

270249

(NTT3) hypothetical protein
0.8161

bd974

(bd974) DUF751
0.8153

bd463

(bd463) Aa_trans superfamily
0.8086

37450

(SPP1) PqqL
0.806

bd1078

(bd1078) NA
0.7942

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Pyr_redox_dim superfamily Pyridine nucleotide-disulphide oxidoreductase, dimerization domain; This family includes both class... - 149.25 7.13E-43 405 - 514 superfamily 251571
Pyr_redox_dim superfamily Pyridine nucleotide-disulphide oxidoreductase, dimerization domain; This family includes both class... - 149.25 7.13E-43 405 - 514 superfamily 251571
Pyr_redox superfamily Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II... - 81.8358 5.55E-19 236 - 314 superfamily 249559
Pyr_redox superfamily Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II... - 81.8358 5.55E-19 236 - 314 superfamily 249559
PRK06116 glutathione reductase; Validated - 666.86 0 52 - 514 multi-dom 235701

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 228584 196501 Not available Cre09.g396252.t1.1 AT3G54660.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006118 GO:0016491 GO:0050660 GO:0015036 GO:0005737 GO:0004362 -

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0050660

flavin adenine dinucleotide binding

Details: 
Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
GO Category: 
MF

GO:0015036

disulfide oxidoreductase activity

Details: 
Catalysis of the reaction: substrate with reduced sulfide groups = substrate with oxidized disulfide bonds.
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0004362

glutathione-disulfide reductase activity

Details: 
Catalysis of the reaction: 2 glutathione + NADP+ = glutathione disulfide + NADPH + H+.
GO Category: 
MF

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