264656 Tryp_SPcThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
264656	chr_19c_29	Tryp_SPc	261190	262080	+	Tryp_SPc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444416	Thaps264656.1, Thaps264656.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0384

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0253	0.34	0.00027 190000

Most Highly Correlated Transcripts

2635 RCC1 0.9343	5357 hypothetical protein 0.9163	1764 hypothetical protein 0.9106	24894 hypothetical protein 0.909	10836 hypothetical protein 0.9013	262378 (FRU1) hypothetical protein 0.8998
3192 NADB_Rossmann superfamily 0.8888	24561 hypothetical protein 0.8873	1940 hypothetical protein 0.8821	25913 hypothetical protein 0.8812

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Tryp_SPc superfamily		Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are...	-	215.988	2.14E-69	25 - 259	superfamily	238113
Tryp_SPc superfamily		Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are...	-	215.988	2.14E-69	25 - 259	superfamily	238113
Tryp_SPc		Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are...	-	213.308	2.38E-68	24 - 259	multi-dom	214473

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0004295 GO:0006508 GO:0004263 -

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