264730 AdoMet_MTases superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264730 chr_20 AdoMet_MTases superfamily 637069 639229 + AdoMet_MTases superfamily

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0392

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0044
 0.46

Most Highly Correlated Transcripts

bd737

(bd737) NA
0.9603

bd1801

(bd1801) NA
0.9454

bd738

(bd738) NA
0.945

bd690

(bd690) NA
0.9111

bd1946

(bd1946) NA
0.9055

bd1877

(bd1877) NA
0.8903

7335

hypothetical protein
0.887

bd1692

(bd1692) NA
0.8666

bd1840

(bd1840) NA
0.8662

23510

hypothetical protein
0.8613

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AdoMet_MTases superfamily S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases... - 172.263 7.81E-49 325 - 553 superfamily 266528
AdoMet_dc S-adenosylmethionine decarboxylase; This family contains several S-adenosylmethionine decarboxylase... cl00687 89.8688 2.47E-21 175 - 253 specific 251466
AdoMet_dc superfamily S-adenosylmethionine decarboxylase; This family contains several S-adenosylmethionine decarboxylase... - 89.8688 2.47E-21 175 - 253 superfamily 260572

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 181195 207554 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003824 GO:0004766 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0004766

spermidine synthase activity

Details: 
Catalysis of the reaction: S-adenosylmethioninamine + putrescine = 5'-methylthioadenosine + spermidine.
GO Category: 
MF

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