264740 ABC_subfamily_A
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264740 chr_20 ABC_subfamily_A 689504 692262 + ABC_subfamily_A

Synonyms

NCBI ID Ensembl Genomes exon ID
7447779 Thaps264740.3, Thaps264740.1, Thaps264740.2, Thaps264740.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0388

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0031
 0.36

Most Highly Correlated Transcripts

5321

CobN-Mg_chel superfamily
0.8989

11869

hypothetical protein
0.8912

263859

GH18_chitinase-like superfamily
0.8867

34228

Strumpellin superfamily
0.8865

17966

Alg14
0.8844

263734

LRR_RI superfamily
0.8818

3551

hypothetical protein
0.881

2065

hypothetical protein
0.8761

4959

hypothetical protein
0.8707

5858

hypothetical protein
0.8702

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_subfamily_A ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the... cl17201 257.819 1.34E-79 550 - 765 specific 213230
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 257.819 1.34E-79 550 - 765 superfamily 266551
CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] - 247.606 7.55E-75 546 - 857 multi-dom 224054

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 172711 284283 440322 Cre03.g151400.t1.1 AT3G47730.1 505814

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0016887 GO:0000166 GO:0017111 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

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