264865 (Tp_CSF4) CSP_CDSThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
264865	chr_22	(Tp_CSF4) CSP_CDS	890157	890725	+	CSP_CDS

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449424	Thaps264865.2, Thaps264865.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0015

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0204	0.18	4600 1400

Most Highly Correlated Transcripts

bd1645 (bd1645) tpt 0.984	bd1820 (bd1820) Fasciclin 0.9664	bd1306 (bd1306) NA 0.966	bd1160 (bd1160) Chloroa_b-bind superfamily 0.9633	bd218 (bd218) Chloroa_b-bind superfamily 0.9615	bd1765 (bd1765) NA 0.9575
bd1387 (bd1387) psbE 0.9527	bd1304 (bd1304) Ycf4 0.9454	bd1078 (bd1078) NA 0.9422	bd1342 (bd1342) psaL 0.9405

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CSP_CDS		Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes,...	cl09927	82.6266	2.03E-21	46 - 111	specific	239905
S1_like superfamily		S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated...	-	82.6266	2.03E-21	46 - 111	superfamily	263921

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_47905	PHATRDRAFT_47905	155055	Not available	Not available	Not available	AT2G17870.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003677 GO:0006355 GO:0003676 -

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