2673 RieskeThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
2673	chr_2	Rieske	1573664	1575446	+	Rieske

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446673	Thaps2673.4, Thaps2673.1, Thaps2673.2, Thaps2673.5, Thaps2673.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0022

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0237	0.26	26 220

Most Highly Correlated Transcripts

bd1342 (bd1342) psaL 0.9773	bd218 (bd218) Chloroa_b-bind superfamily 0.972	bd1820 (bd1820) Fasciclin 0.9703	bd1160 (bd1160) Chloroa_b-bind superfamily 0.9694	bd1306 (bd1306) NA 0.9652	bd1645 (bd1645) tpt 0.9572
bd1403 (bd1403) NA 0.9515	26246 (Lhcr3) fucoxanthin chl a/c light-harvesting protein 0.9509	23808 hypothetical protein 0.9493	25402 (Lhcf10) fucoxanthin chl a/c light-harvesting protein, major type 0.949

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Rieske		Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (...	cl00938	69.0547	2.12E-14	349 - 419	specific	239550
Rieske superfamily		Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (...	-	69.0547	2.12E-14	349 - 419	superfamily	260709

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0006118 GO:0016491 -

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