268117 H2A
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268117 chr_1 H2A 2529769 2530653 + H2A

Synonyms

NCBI ID Ensembl Genomes exon ID
7449085 Thaps268117.1, Thaps268117.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0082

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0277
 0.16

Most Highly Correlated Transcripts

36753

Motor_domain superfamily
0.9429

10180

hypothetical protein
0.9378

bd950

(bd950) NA
0.9366

33883

CYCLIN
0.9366

7087

hypothetical protein
0.9361

bd1983

(bd1983) RecA-like_NTPases superfamily
0.9357

4607

hypothetical protein
0.9354

3482

hypothetical protein
0.9349

8522

RNRR2
0.9348

1393

(CAP1) Smc
0.9338

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
H2A superfamily Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A,... - 172.905 3.46E-56 14 - 121 superfamily 238029
H2A superfamily Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A,... - 172.905 3.46E-56 14 - 121 superfamily 238029

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_28445 PHATRDRAFT_28445 272661 240378 445748 Cre13.g567700.t1.2 AT2G38810.2 295340

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000786 GO:0003677 GO:0005634 GO:0006334 GO:0007001 -

GO:0000786

nucleosome

Details: 
A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
GO Category: 
CC

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006334

nucleosome assembly

Details: 
The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
GO Category: 
BP

GO:0007001

NA

Details: 
NA
GO Category: 
NA

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