268247 SLBP_RNA_bindThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
268247	chr_2	SLBP_RNA_bind	871338	872661	-	SLBP_RNA_bind

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446535	Thaps268247.2, Thaps268247.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0082

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0241	0.29	480 100000

Most Highly Correlated Transcripts

4214 hypothetical protein 0.9702	bd1983 (bd1983) RecA-like_NTPases superfamily 0.96	5867 CDC6 0.9389	23064 hypothetical protein 0.9357	32555 RNRR2 0.9342	bd1173 (bd1173) S_TKc 0.9311
269422 wd-40 repeat-containing protein 0.9254	36441 CYCLIN 0.9199	bd950 (bd950) NA 0.9161	2267 hypothetical protein 0.9155

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SLBP_RNA_bind superfamily		Histone RNA hairpin-binding protein RNA-binding domain; This family represents the RNA-binding...	-	109.605	1.03E-29	169 - 237	superfamily	259381
SLBP_RNA_bind superfamily		Histone RNA hairpin-binding protein RNA-binding domain; This family represents the RNA-binding...	-	109.605	1.03E-29	169 - 237	superfamily	259381

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_43529	PHATRDRAFT_43529	269351	178105	Not available	Cre06.g286750.t1.2	Not available	519141

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments