268868 (ERCC2) rad3
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
268868 chr_5 (ERCC2) rad3 716244 718918 + rad3
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0172
0.937
FBPase
0.9201
MAD
0.9197
(FAO1) fadB
0.9192
hypothetical protein
0.9166
PRK05279
0.9163
PDEase_I
0.9157
NBD_sugar-kinase_HSP70_actin superfamily
0.9148
Sec3_C superfamily
0.9137
HAD-SF-IIA-hyp3
0.9133
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 283.115 1.36E-88 8 - 285 superfamily 266587
DUF1227 superfamily Protein of unknown function (DUF1227); This family represents a conserved region within a number of... - 189.766 2.69E-56 273 - 425 superfamily 191608
DUF1227 superfamily Protein of unknown function (DUF1227); This family represents a conserved region within a number of... - 189.766 2.69E-56 273 - 425 superfamily 191608
HELICc2 helicase superfamily c-terminal domain; helicase superfamily c-terminal domain. cl17460 171.693 5.92E-50 557 - 701 specific 214694
Helicase_C_2 superfamily Helicase C-terminal domain; This domain is the second of two tandem AAA domains found in a wide... - 171.693 5.92E-50 557 - 701 superfamily 266701
rad3 DNA repair helicase (rad3); All proteins in this family for which funcitons are known are DNA-DNA... - 762.72 0 7 - 723 multi-dom 233047
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54072 PHATRDRAFT_54072 201859 210123 63180 Cre17.g706300.t1.1 AT1G03190.2 354695
KEGG description KEGG Pathway
Nucleotide excision repair map03420
GO:0003677 GO:0004003 GO:0005524 GO:0005634 GO:0006289 GO:0016818 GO:0003676 GO:0008026 GO:0006139 GO:0000810 GO:0004787 GO:0008722 GO:0008758 GO:0008796 GO:0008828 GO:0016462 GO:0019176 GO:0019177 -

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

ATP-dependent DNA helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of the DNA helix.
GO Category: 
MF

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

nucleotide-excision repair

Details: 
A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts).
GO Category: 
BP

hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

Details: 
Catalysis of the hydrolysis of any acid anhydride which contains phosphorus.
GO Category: 
MF

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

ATP-dependent helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

nucleobase-containing compound metabolic process

Details: 
Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
GO Category: 
BP

diacylglycerol diphosphate phosphatase activity

Details: 
Catalysis of the reaction: a 1,2-diacyl-sn-glycerol 3-diphosphate + H2O = a 1,2-diacyl-sn-glycerol 3-phosphate + phosphate.
GO Category: 
MF

thiamine-pyrophosphatase activity

Details: 
Catalysis of the reaction: TDP + H2O = TMP + phosphate.
GO Category: 
MF

NA

Details: 
NA
GO Category: 
NA

UDP-2,3-diacylglucosamine hydrolase activity

Details: 
Catalysis of the reaction: H2O + UDP-2,3-bis(3-hydroxymyristoyl)glucosamine = 2,3-bis(3-hydroxymyristoyl)-beta-D-glucosaminyl 1-phosphate + UMP.
GO Category: 
MF

bis(5'-nucleosyl)-tetraphosphatase activity

Details: 
Catalysis of the hydrolysis of P(1),P(4)-bis(5'-nucleosyl)tetraphosphate into two nucleotides.
GO Category: 
MF

dATP pyrophosphohydrolase activity

Details: 
Catalysis of the reaction: deoxy-ATP + H2O = dAMP + diphosphate.
GO Category: 
MF

pyrophosphatase activity

Details: 
Catalysis of the hydrolysis of a pyrophosphate bond between two phosphate groups, leaving one phosphate on each of the two fragments.
GO Category: 
MF

dihydroneopterin monophosphate phosphatase activity

Details: 
Catalysis of the reaction: dihydroneopterin monophosphate = dihydroneopterin + phosphate.
GO Category: 
MF

dihydroneopterin triphosphate pyrophosphohydrolase activity

Details: 
Catalysis of the reaction: dihydroneopterin triphosphate = dihydroneopterin phosphate + diphosphate.
GO Category: 
MF
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