268616 CRM1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268616 chr_4 CRM1 318619 322377 - CRM1

Synonyms

NCBI ID Ensembl Genomes exon ID
7442071 Thaps268616.2, Thaps268616.4, Thaps268616.3, Thaps268616.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0321

Most Highly Correlated Transcripts

bd1893

(bd1893) NA
0.9524

bd718

(bd718) PRK10387
0.9417

bd463

(bd463) Aa_trans superfamily
0.938

bd1306

(bd1306) NA
0.9343

bd1387

(bd1387) psbE
0.9238

bd2073

(bd2073) psbB
0.9206

bd1078

(bd1078) NA
0.9119

bd1645

(bd1645) tpt
0.908

bd843

(bd843) NA
0.9034

bd1304

(bd1304) Ycf4
0.9032

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CRM1_C CRM1 C terminal; CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a... cl07396 398.283 4.26E-129 715 - 1040 specific 198170
CRM1_C superfamily CRM1 C terminal; CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a... - 398.283 4.26E-129 715 - 1040 superfamily 263334
Xpo1 superfamily Exportin 1-like protein; The sequences featured in this family are similar to a region close to the... - 156.239 1.57E-43 119 - 264 superfamily 254770
Xpo1 superfamily Exportin 1-like protein; The sequences featured in this family are similar to a region close to the... - 156.239 1.57E-43 119 - 264 superfamily 254770
IBN_N Importin-beta N-terminal domain; Members of the importin-beta (karyopherin-beta) family can bind... cl04271 63.0313 6.45E-12 42 - 108 specific 197981
IBN_N superfamily Importin-beta N-terminal domain; Importin-beta N-terminal domain. - 63.0313 6.45E-12 42 - 108 superfamily 262079
CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and... - 1057.62 0 18 - 1044 multi-dom 227432

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_24186 PHATRDRAFT_24186 265181 238543 464769 Cre03.g146487.t1.1 AT3G03110.1 509857

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0000059 GO:0005634 GO:0005643 GO:0005737 GO:0008565 -

GO:0000059

protein import into nucleus, docking

Details: 
A protein complex assembly process that contributes to protein import into the nucleus, and that results in the association of a cargo protein, a carrier protein such as an importin alpha/beta heterodimer, and a nucleoporin located at the periphery of the nuclear pore complex.
GO Category: 
BP

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0005643

nuclear pore

Details: 
Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined.
GO Category: 
CC

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0008565

protein transporter activity

Details: 
Enables the directed movement of proteins into, out of or within a cell, or between cells.
GO Category: 
MF

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