268862 PLN03076Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
268862	chr_5	PLN03076	629006	635693	+	PLN03076

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451786	Thaps268862.2, Thaps268862.1, Thaps268862.9, Thaps268862.5, Thaps268862.7, Thaps268862.3, Thaps268862.6, Thaps268862.4, Thaps268862.8

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0127

Most Highly Correlated Transcripts

bd836 (bd836) Methyltransf_16 superfamily 0.8663	24035 Peptidase_C19 superfamily 0.8633	6404 hypothetical protein 0.8563	20808 hypothetical protein 0.854	8288 hypothetical protein 0.854	3502 hypothetical protein 0.8511
5093 hypothetical protein 0.8499	24618 hypothetical protein 0.8491	5595 hypothetical protein 0.8489	22882 PUB 0.8488

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Sec7		Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central...	cl00136	225.18	1.66E-66	833 - 1013	specific	238100
Sec7 superfamily		Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central...	-	225.18	1.66E-66	833 - 1013	superfamily	260210
Sec7_N superfamily		Guanine nucleotide exchange factor in Golgi transport N-terminal; The full-length Sec7 functions...	-	143.893	1.64E-38	546 - 713	superfamily	257293
Sec7_N superfamily		Guanine nucleotide exchange factor in Golgi transport N-terminal; The full-length Sec7 functions...	-	143.893	1.64E-38	546 - 713	superfamily	257293
DUF1981 superfamily		Domain of unknown function (DUF1981); Members of this family of functionally uncharacterized...	-	91.1121	4.51E-21	1371 - 1470	superfamily	204198
DUF1981 superfamily		Domain of unknown function (DUF1981); Members of this family of functionally uncharacterized...	-	91.1121	4.51E-21	1371 - 1470	superfamily	204198
PLN03076		ARF guanine nucleotide exchange factor (ARF-GEF); Provisional	-	509.75	1.61E-149	417 - 1673	multi-dom	215560

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Cre09.g390319.t1.1	Not available	360752

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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