268872 SETThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
268872	chr_5	SET	761587	764466	+	SET

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449580	Thaps268872.2, Thaps268872.4, Thaps268872.3, Thaps268872.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0322

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0229	0.40	120 270

Most Highly Correlated Transcripts

5797 ThTPase 0.9192	21568 hypothetical protein 0.8972	5689 HA 0.8949	22688 hypothetical protein 0.892	20666 RabGAP-TBC 0.8915	25451 AAA superfamily 0.8885
10753 hypothetical protein 0.8877	4108 hypothetical protein 0.8867	22753 hypothetical protein 0.8867	12836 EEP superfamily 0.8861

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SET		SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain; Putative methyl transferase, based on...	cl02566	139.392	3.53E-38	730 - 840	specific	214614
SET superfamily		SET domain; SET domains are protein lysine methyltransferase enzymes. SET domains appear to be...	-	139.392	3.53E-38	730 - 840	superfamily	261347

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_6698	PHATRDRAFT_6698	181541	229657	47083	Cre17.g746247.t1.1	AT2G23380.1	479110

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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