20666 RabGAP-TBC
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
20666 chr_1 RabGAP-TBC 668317 677031 - RabGAP-TBC

Synonyms

NCBI ID Ensembl Genomes exon ID
7449145 Thaps20666.4, Thaps20666.3, Thaps20666.1, Thaps20666.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0333

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0258
 0.30

Most Highly Correlated Transcripts

21568

hypothetical protein
0.9221

22442

CHD
0.922

24235

Peptidase_C19 superfamily
0.9201

24655

hypothetical protein
0.9194

6922

hypothetical protein
0.9001

268196

PHD
0.8979

12960

Vac14_Fig4_bd
0.896

268872

SET
0.8915

269496

(Tp_TAZ3_PHD1) KAT11 superfamily
0.8891

22244

hypothetical protein
0.8874

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RabGAP-TBC Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are... cl02495 109.382 4.50E-26 2270 - 2471 specific 249964
RabGAP-TBC superfamily Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are... - 109.382 4.50E-26 2270 - 2471 superfamily 261308

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_31816 PHATRDRAFT_31816 180355 320666 Not available Not available Not available 529368

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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