268896 DnaQ_like_exo superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268896 chr_5 DnaQ_like_exo superfamily 1193479 1194669 + DnaQ_like_exo superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7453172 Thaps268896.3, Thaps268896.1, Thaps268896.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0141

Most Highly Correlated Transcripts

30701

PRK05279
0.9473

34968

Glyco_hydro_47
0.9356

32468

STKc_CDC2L1
0.9341

22682

hypothetical protein
0.9309

33895

GlcD
0.9302

23817

hypothetical protein
0.9272

261400

NA
0.9272

3500

hypothetical protein
0.9226

17582

HAD-SF-IIA-hyp3
0.9216

263866

AAK superfamily
0.9214

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DnaQ_like_exo superfamily DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily; The DnaQ-like... - 233.277 2.73E-77 35 - 204 superfamily 263941

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_46460 PHATRDRAFT_46460 199225 188895 231780 Cre06.g304550.t1.1 Not available Not available

KEGG

KEGG description KEGG Pathway
RNA degradation map03018

GO Terms

GO:0004527 GO:0005622 GO:0008859 -

GO:0004527

exonuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0008859

exoribonuclease II activity

Details: 
Catalysis of the reaction: RNA + H2O = 5'-phosphomononucleotides. Cleaves RNA in the 3' to 5' direction.
GO Category: 
MF

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