34968 Glyco_hydro_47
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34968 chr_6 Glyco_hydro_47 793611 797210 - Glyco_hydro_47

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0172

Most Highly Correlated Transcripts

264674

2OG-FeII_Oxy_3 superfamily
0.9482

30701

PRK05279
0.9446

32468

STKc_CDC2L1
0.9393

261400

NA
0.9379

268896

DnaQ_like_exo superfamily
0.9356

32684

PRTases_typeI
0.9317

268904

hypothetical protein
0.9286

264809

SIR2 superfamily
0.9282

4064

NADB_Rossmann superfamily
0.9279

33075

RimI
0.9273

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Glyco_hydro_47 Glycosyl hydrolase family 47; Members of this family are alpha-mannosidases that catalyse the... cl08327 546.038 0 638 - 1079 specific 250690
Glyco_hydro_47 superfamily Glycosyl hydrolase family 47; Members of this family are alpha-mannosidases that catalyse the... - 546.038 0 638 - 1079 superfamily 263593

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Cre07.g336600.t1.1 Not available Not available

KEGG

KEGG description KEGG Pathway
Protein processing in endoplasmic reticulum map04141

GO Terms

GO:0004571 GO:0005509 GO:0006487 GO:0016020 -

GO:0004571

mannosyl-oligosaccharide 1,2-alpha-mannosidase activity

Details: 
Catalysis of the hydrolysis of the terminal (1->2)-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide Man(9)(GlcNAc)(2).
GO Category: 
MF

GO:0005509

calcium ion binding

Details: 
Interacting selectively and non-covalently with calcium ions (Ca2+).
GO Category: 
MF

GO:0006487

protein N-linked glycosylation

Details: 
A protein glycosylation process in which a carbohydrate or carbohydrate derivative unit is added to a protein via the N4 atom of peptidyl-asparagine, the omega-N of arginine, or the N1' atom peptidyl-tryptophan.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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