269017 (FRD1) flavo_cyto_c
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269017 chr_6 (FRD1) flavo_cyto_c 409370 412023 + flavo_cyto_c

Synonyms

NCBI ID Ensembl Genomes exon ID
7451156 Thaps269017.2, Thaps269017.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0006

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0064
 0.41

Most Highly Correlated Transcripts

261400

NA
0.9178

262271

PIP5K
0.8943

26991

GRX_GRXh_1_2_like
0.8844

3500

hypothetical protein
0.8844

2317

Mito_carr
0.8835

268592

VDE superfamily
0.88

23817

hypothetical protein
0.8787

263810

PTZ00430
0.8761

36669

TPT
0.8701

268908

Trans_IPPS_HH
0.8689

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain; This family includes heme binding domains from a... cl02041 94.9575 1.20E-23 464 - 527 specific 249651
Cyt-b5 superfamily Cytochrome b5-like Heme/Steroid binding domain; This family includes heme binding domains from a... - 94.9575 1.20E-23 464 - 527 superfamily 261158
PRK06175 superfamily L-aspartate oxidase; Provisional - 100.914 3.22E-23 4 - 475 superfamily 180442
flavo_cyto_c flavocytochrome c; This model describes a family of redox proteins related to the succinate... - 313.126 1.42E-100 2 - 433 multi-dom 233583

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_51720 PHATRDRAFT_51720 196661 163215 Not available Cre17.g696600.t1.1 Not available 541857

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006118 GO:0016491 GO:0000104 -

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0000104

succinate dehydrogenase activity

Details: 
Catalysis of the reaction: succinate + acceptor = fumarate + reduced acceptor.
GO Category: 
MF

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