269325 (Tp_HSF_2.6c) HSF
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269325 chr_8 (Tp_HSF_2.6c) HSF 99386 100923 + HSF

Synonyms

NCBI ID Ensembl Genomes exon ID
7452406 Thaps269325.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0463

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0111
 0.37

Most Highly Correlated Transcripts

23665

(HSF7) HSF
0.8867

36889

S_TKc
0.8798

10428

hypothetical protein
0.8751

8974

hypothetical protein
0.8681

24870

hypothetical protein
0.8679

25439

hypothetical protein
0.8671

2524

hypothetical protein
0.8645

24571

copper induced cell-surface protein
0.8576

bd1844

(bd1844) NA
0.8529

22669

hypothetical protein
0.8504

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HSF heat shock factor; heat shock factor. cl12113 74.63 1.40E-16 86 - 177 specific 214654
HSF_DNA-bind superfamily HSF-type DNA-binding; HSF-type DNA-binding. - 74.63 1.40E-16 86 - 177 superfamily 264552

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005634 GO:0006355 GO:0003677 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

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