Thaps_bicluster_0111 Residual: 0.37
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0111 0.37 Thalassiosira pseudonana
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Displaying 1 - 30 of 30
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10428 hypothetical protein

10428 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10428
11059 hypothetical protein

11059 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11059
11722 hypothetical protein

11722 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11722
21449 hypothetical protein

21449 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21449
21774 hypothetical protein

21774 - hypothetical protein

GO Terms:

GO:0004308

CD Domains:

Go To Gene Page:

21774
22669 hypothetical protein

22669 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22669
22855 hypothetical protein

22855 - hypothetical protein

GO Terms:

GO:0005576, GO:0006030, GO:0008061

CD Domains:

Go To Gene Page:

22855
23376 hypothetical protein

23376 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23376
23665 (HSF7) HSF

23665 - (HSF7) HSF

GO Terms:

GO:0003700, GO:0005634, GO:0006355, GO:0003677

CD Domains:

Go To Gene Page:

23665
23888 hypothetical protein

23888 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23888
23948 hypothetical protein

23948 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23948
24559 hypothetical protein

24559 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24559
24571 copper induced cell-surface protein

24571 - copper induced cell-surface protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24571
24748 hypothetical protein

24748 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24748
2524 hypothetical protein

2524 - hypothetical protein

GO Terms:

GO:0000074, GO:0005634

CD Domains:

Go To Gene Page:

2524
25594 hypothetical protein

25594 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25594
268220 Peptidase_M6 superfamily

268220 - Peptidase_M6 superfamily

GO Terms:

GO:0006508, GO:0008237, GO:0008270

CD Domains:

Go To Gene Page:

268220
268966 GH18_chitinase-like superfamily

268966 - GH18_chitinase-like superfamily

GO Terms:

GO:0008152, GO:0016787, GO:0003824, GO:0005975, GO:0004568, GO:0008843

CD Domains:

Go To Gene Page:

268966
269325 (Tp_HSF_2.6c) HSF

269325 - (Tp_HSF_2.6c) HSF

GO Terms:

GO:0003700, GO:0005634, GO:0006355, GO:0003677

CD Domains:

Go To Gene Page:

269325
2928 hypothetical protein

2928 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2928
3036 hypothetical protein

3036 - hypothetical protein

GO Terms:

GO:0000074

CD Domains:

Go To Gene Page:

3036
3110 hypothetical protein

3110 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3110
5769 hypothetical protein

5769 - hypothetical protein

GO Terms:

GO:0005576, GO:0006030, GO:0008061

CD Domains:

Go To Gene Page:

5769
7815 hypothetical protein

7815 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7815
7950 hypothetical protein

7950 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7950
8028 hypothetical protein

8028 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8028
8897 hypothetical protein

8897 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8897
8974 hypothetical protein

8974 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8974
9268 hypothetical protein

9268 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9268
GO ID Go Term p-value q-value Cluster
GO:0006030 chitin metabolism 0.000791209 1 Thaps_bicluster_0111
GO:0000074 regulation of cell cycle 0.00638764 1 Thaps_bicluster_0111
GO:0006355 regulation of transcription, DNA-dependent 0.129013 1 Thaps_bicluster_0111
GO:0005975 carbohydrate metabolism 0.144797 1 Thaps_bicluster_0111
GO:0006457 protein folding 0.238676 1 Thaps_bicluster_0111
GO:0006508 proteolysis and peptidolysis 0.459068 1 Thaps_bicluster_0111
GO:0008152 metabolism 0.585137 1 Thaps_bicluster_0111
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