269333 PTR2 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
269333	chr_8	PTR2 superfamily	269366	271585	+	PTR2 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450111	Thaps269333.3, Thaps269333.2, Thaps269333.1, Thaps269333.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0298

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0070	0.44	0.00068 410

Most Highly Correlated Transcripts

268443 SAICAR_synt_Sc 0.9232	4108 hypothetical protein 0.9079	40200 TRX_reduct 0.9025	36007 Aldolase_II superfamily 0.8967	267979 HCO3_cotransp superfamily 0.89	24218 hypothetical protein 0.8768
30701 PRK05279 0.8763	35136 NA 0.8762	36673 PTZ00318 0.8736	1175 hypothetical protein 0.8728

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PTR2 superfamily		POT family; The POT (proton-dependent oligopeptide transport) family all appear to be proton...	-	75.0426	9.16E-15	128 - 436	superfamily	266649

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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