269780 DUF382
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269780 chr_14 DUF382 695816 697775 - DUF382

Synonyms

NCBI ID Ensembl Genomes exon ID
7452719 Thaps269780.1, Thaps269780.3, Thaps269780.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0164

Most Highly Correlated Transcripts

30701

PRK05279
0.9493

28523

RagC_like
0.9188

22507

hypothetical protein
0.9163

268358

hypothetical protein
0.9141

37497

cysE
0.914

1676

hypothetical protein
0.9113

262305

DnaJ_bact
0.9099

6997

hypothetical protein
0.9076

264321

PP2Cc
0.9074

20978

hypothetical protein
0.9069

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DUF382 superfamily Domain of unknown function (DUF382); This domain is specific to the human splicing factor 3b... - 213.252 4.37E-66 179 - 308 superfamily 112836
DUF382 superfamily Domain of unknown function (DUF382); This domain is specific to the human splicing factor 3b... - 213.252 4.37E-66 179 - 308 superfamily 112836
PSP PSP; Proline rich domain found in numerous spliceosome associated proteins. cl02643 92.9839 3.62E-23 317 - 365 specific 202864
PSP superfamily PSP; Proline rich domain found in numerous spliceosome associated proteins. - 92.9839 3.62E-23 317 - 365 superfamily 207686

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49469 PHATRDRAFT_49469 158351 254661 216021 Cre12.g514450.t1.2 AT4G21660.1 297360

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0005634 GO:0006397 -

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006397

mRNA processing

Details: 
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
GO Category: 
BP

Add comment

Log in to post comments