28523 RagC_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
28523 chr_6 RagC_like 489736 491102 - RagC_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7451168 Thaps28523.3, Thaps28523.1, Thaps28523.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0113

Most Highly Correlated Transcripts

30701

PRK05279
0.9418

13794

WD40
0.9288

38736

S_TKc
0.9281

33348

IGPD superfamily
0.9243

39539

Pkinase
0.92

23819

hypothetical protein
0.9196

269780

DUF382
0.9188

23784

hypothetical protein
0.9146

35136

NA
0.9132

1520

hypothetical protein
0.9118

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RagC_like Rag GTPase, subfamily of Ras-related GTPases, includes Ras-related GTP-binding proteins C and D;... cl17170 244.054 3.18E-80 1 - 177 specific 206745
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 244.054 3.18E-80 1 - 177 superfamily 266525
Gtr1_RagA Gtr1/RagA G protein conserved region; GTR1 was first identified in S. cerevisiae as a suppressor of... - 235.955 2.25E-76 1 - 229 multi-dom 252733

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_14103 PHATRDRAFT_14103 180670 238794 445701 Not available Not available 552896

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005634 GO:0005737 -

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

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