269893 TOPRIM_DnaG_primases
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269893 chr_17 TOPRIM_DnaG_primases 95595 98730 + TOPRIM_DnaG_primases

Synonyms

NCBI ID Ensembl Genomes exon ID
7444170 Thaps269893.2, Thaps269893.3, Thaps269893.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0226

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0184
 0.33

Most Highly Correlated Transcripts

22728

hypothetical protein
0.9253

20621

hypothetical protein
0.8928

1615

hypothetical protein
0.8882

23922

(Tp_AP2-EREBP9) regulator [Rayko]
0.8855

263872

PRK14329
0.8835

21190

SAC3_GANP
0.8819

7066

hypothetical protein
0.877

23442

hypothetical protein
0.8741

23898

NADB_Rossmann superfamily
0.8724

20682

hypothetical protein
0.8724

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain... cl00718 90.6511 1.48E-21 97 - 183 specific 173784
TOPRIM superfamily Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA,... - 90.6511 1.48E-21 97 - 183 superfamily 260587
Toprim_N superfamily DNA primase catalytic core, N-terminal domain; DNA primase catalytic core, N-terminal domain. - 87.312 6.21E-20 1 - 67 superfamily 254701
Toprim_N superfamily DNA primase catalytic core, N-terminal domain; DNA primase catalytic core, N-terminal domain. - 87.312 6.21E-20 1 - 67 superfamily 254701

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_42826 PHATRDRAFT_42826 Not available 62880 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 GO:0006304 GO:0003896 GO:0006269 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0006304

DNA modification

Details: 
The covalent alteration of one or more nucleotide sites in DNA, resulting in a change in its properties.
GO Category: 
BP

GO:0003896

DNA primase activity

Details: 
Catalysis of the synthesis of a short RNA primer on a DNA template, providing a free 3'-OH that can be extended by DNA-directed DNA polymerases. Catalyzed by a DNA-directed RNA polymerase that forms a complex with alpha DNA polymerase.
GO Category: 
MF

GO:0006269

DNA replication, synthesis of RNA primer

Details: 
The synthesis of a short RNA polymer, usually 4-15 nucleotides long, using one strand of unwound DNA as a template; the RNA then serves as a primer from which DNA polymerases extend synthesis.
GO Category: 
BP

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