39845 (DNA_TopoIV) PRK05560
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
39845 chr_3 (DNA_TopoIV) PRK05560 670025 672638 - PRK05560

Synonyms

NCBI ID Ensembl Genomes exon ID
7441701 Thaps39845.2, Thaps39845.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0220

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0190
 0.26

Most Highly Correlated Transcripts

11949

Nop14
0.9415

36434

DUF1253
0.9406

22672

hypothetical protein
0.9369

268735

(GPB1) WD40
0.9277

32395

RNA_pol
0.9248

264345

SpoU
0.9242

21050

Ras_like_GTPase superfamily
0.9218

22499

TrmA
0.9174

33670

RNRR2
0.9158

24123

fumC
0.9148

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TOP4c superfamily DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC... - 593.775 0 10 - 469 superfamily 238111
TOP4c superfamily DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC... - 593.775 0 10 - 469 superfamily 238111
PRK05560 DNA gyrase subunit A; Validated - 1133.21 0 3 - 813 multi-dom 235502

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_33633 PHATR_33633 265863 320393 424104 Cre04.g221650.t1.1 AT3G10690.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0003918 GO:0005524 GO:0006259 GO:0006265 GO:0005694 GO:0006268 GO:0003916 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0003918

DNA topoisomerase type II (ATP-hydrolyzing) activity

Details: 
Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006259

DNA metabolic process

Details: 
Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
GO Category: 
BP

GO:0006265

DNA topological change

Details: 
The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
GO Category: 
BP

GO:0005694

chromosome

Details: 
A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
GO Category: 
CC

GO:0006268

DNA unwinding involved in DNA replication

Details: 
The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating unpaired template strands for DNA replication.
GO Category: 
BP

GO:0003916

DNA topoisomerase activity

Details: 
Catalysis of the transient cleavage and passage of individual DNA strands or double helices through one another, resulting a topological transformation in double-stranded DNA.
GO Category: 
MF

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