270127 (CHT1_2) Glyco_18
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
270127 chr_23 (CHT1_2) Glyco_18 249520 250755 + Glyco_18

Synonyms

NCBI ID Ensembl Genomes exon ID
7442655 Thaps270127.1, Thaps270127.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0152

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0041
 0.50

Most Highly Correlated Transcripts

264903

(CHT1_1) GH18_chitinase-like superfamily
0.8144

5778

hypothetical protein
0.7526

24565

COG3899
0.7325

35318

2A0106
0.7301

3006

hypothetical protein
0.7263

bd1124

(bd1124) LSm4
0.7216

21342

hypothetical protein
0.7205

22959

hypothetical protein
0.7198

12079

hypothetical protein
0.7148

12118

hypothetical protein
0.7138

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GH18_chitinase-like superfamily The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer... - 111.882 3.64E-28 3 - 159 superfamily 263970
Glyco_18 Glyco_18 domain; Glyco_18 domain. - 124.328 1.41E-32 3 - 159 multi-dom 214753

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005576 GO:0006030 GO:0008061 -

GO:0005576

extracellular region

Details: 
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
GO Category: 
CC

GO:0006030

chitin metabolic process

Details: 
The chemical reactions and pathways involving chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.
GO Category: 
BP

GO:0008061

chitin binding

Details: 
Interacting selectively and non-covalently with chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.
GO Category: 
MF

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