bd1124 (bd1124) LSm4
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
bd1124 bd_5x160 (bd1124) LSm4 10358 10777 - LSm4

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0258

Most Highly Correlated Transcripts

bd1125

(bd1125) LSm4
0.9502

bd909

(bd909) NA
0.882

36139

DUF3593
0.8545

262148

Cyt-b5
0.8459

262149

Cyt-b5
0.8459

25879

TopA
0.8446

12047

hypothetical protein
0.8275

269504

(ACT4) ACTIN
0.8261

269935

hisD
0.8244

25843

hypothetical protein
0.8175

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
LSm4 Like-Sm protein 4; The eukaryotic LSm proteins (LSm2-8 or LSm1-7) assemble into a hetero-heptameric... cl00259 141.174 5.25E-44 2 - 77 specific 212470
Sm_like superfamily Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form... - 141.174 5.25E-44 2 - 77 superfamily 260307

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

Not available -

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