270139 Aa_trans superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
270139 chr_24 Aa_trans superfamily 68938 71095 + Aa_trans superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7451997 Thaps270139.3, Thaps270139.2, Thaps270139.4, Thaps270139.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0066

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0012
 0.49

Most Highly Correlated Transcripts

bd258

(bd258) HU
0.9449

bd1078

(bd1078) NA
0.9391

bd1645

(bd1645) tpt
0.9337

bd1306

(bd1306) NA
0.9255

bd463

(bd463) Aa_trans superfamily
0.9156

bd1160

(bd1160) Chloroa_b-bind superfamily
0.9146

bd1652

(bd1652) ABC_ATPase superfamily
0.9104

bd208

(bd208) DUF3529
0.9092

bd1820

(bd1820) Fasciclin
0.9059

bd846

(bd846) NA
0.9057

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Aa_trans superfamily Transmembrane amino acid transporter protein; This transmembrane region is found in many amino acid... - 101.221 4.53E-24 18 - 402 superfamily 266708

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 199944 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005279 GO:0006865 GO:0016020 -

GO:0005279

NA

Details: 
NA
GO Category: 
NA

GO:0006865

amino acid transport

Details: 
The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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