28441 eIF-3c_N superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
28441 chr_5 eIF-3c_N superfamily 2172196 2175986 - eIF-3c_N superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7444922 Thaps28441.3, Thaps28441.4, Thaps28441.2, Thaps28441.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0221

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0083
 0.43

Most Highly Correlated Transcripts

34533

AAA_11
0.8776

25869

Nrap superfamily
0.8694

13578

SrmB
0.8684

36609

PRK00142
0.8625

264305

UT
0.8606

17657

HSR1_MMR1
0.8479

39812

Sun
0.845

3009

hypothetical protein
0.8449

14109

SrmB
0.8424

261777

MIF4G
0.842

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
eIF-3c_N superfamily Eukaryotic translation initiation factor 3 subunit 8 N-terminus; The largest of the mammalian... - 462.732 6.15E-153 5 - 559 superfamily 253208
PAM PCI/PINT associated module; PCI/PINT associated module. cl02111 62.2595 1.04E-11 635 - 723 specific 214803
PCI superfamily PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15). - 62.2595 1.04E-11 635 - 723 superfamily 261183

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_522 PHATRDRAFT_522 167654 248380 249939 Cre04.g217550.t1.1 AT3G56150.2 561619

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0003743 GO:0005852 GO:0006413 -

GO:0003743

translation initiation factor activity

Details: 
Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO Category: 
MF

GO:0005852

eukaryotic translation initiation factor 3 complex

Details: 
A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs.
GO Category: 
CC

GO:0006413

translational initiation

Details: 
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.
GO Category: 
BP

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