2848 PsbU
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
2848 chr_2 PsbU 2004326 2005110 - PsbU

Synonyms

NCBI ID Ensembl Genomes exon ID
7452492 Thaps2848.2, Thaps2848.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0022

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0218
 0.15

Most Highly Correlated Transcripts

270210

(PsbO) oxygen-evolving enhancer protein 1 precursor
0.9822

bd218

(bd218) Chloroa_b-bind superfamily
0.9807

bd1820

(bd1820) Fasciclin
0.9783

bd1160

(bd1160) Chloroa_b-bind superfamily
0.9726

bd1863

(bd1863) NA
0.959

26246

(Lhcr3) fucoxanthin chl a/c light-harvesting protein
0.9523

2601

(Lhca2) Chloroa_b-bind
0.9414

2341

(Lhcr12) fucoxanthin chlorophyll a/c protein
0.9376

24080

(Lhcr1) fucoxanthin chl a/c light-harvesting protein, lhcr type
0.9352

2342

(Lhcr11) fucoxanthin chlorophyll a/c light-harvesting protein
0.9338

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PsbU Photosystem II 12 kDa extrinsic protein (PsbU); This family consists of several photosystem II 12... cl19066 134.349 4.32E-41 56 - 147 specific 203470
ENDO3c superfamily endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase... - 134.349 4.32E-41 56 - 147 superfamily 267419

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_26293 PHATRDRAFT_26293 268077 312831 419966 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0009654 GO:0019898 GO:0042549 -

GO:0009654

photosystem II oxygen evolving complex

Details: 
A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ).
GO Category: 
CC

GO:0019898

extrinsic component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
GO Category: 
CC

GO:0042549

photosystem II stabilization

Details: 
The stabilization of the photosystem II protein complex, resulting from the phosphorylation of its structural protein subunits, in a cell actively involved in photosynthesis.
GO Category: 
BP

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