2909 DnaQ_like_exo superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
2909 chr_2 DnaQ_like_exo superfamily 2190206 2192084 - DnaQ_like_exo superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7450434 Thaps2909.2, Thaps2909.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0161

Most Highly Correlated Transcripts

21220

KU superfamily
0.9181

12836

EEP superfamily
0.918

34590

nt_trans superfamily
0.901

21304

hypothetical protein
0.9004

10975

hypothetical protein
0.8972

27813

Hid1 superfamily
0.894

261310

COG3349
0.8925

5066

hypothetical protein
0.8899

38652

PI-PLCc_eukaryota
0.8885

8287

hypothetical protein
0.887

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DnaQ_like_exo superfamily DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily; The DnaQ-like... - 168.463 4.85E-49 74 - 283 superfamily 263941

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004601 GO:0006979 GO:0004527 GO:0005622 -

GO:0004601

peroxidase activity

Details: 
Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O.
GO Category: 
MF

GO:0006979

response to oxidative stress

Details: 
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
GO Category: 
BP

GO:0004527

exonuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

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