29232 PLN02502
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
29232 chr_8 PLN02502 1002373 1004598 - PLN02502

Synonyms

NCBI ID Ensembl Genomes exon ID
7452878 Thaps29232.2, Thaps29232.1, Thaps29232.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0241

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0233
 0.34

Most Highly Correlated Transcripts

10853

hypothetical protein
0.903

40223

PLN02347
0.9008

8157

hypothetical protein
0.8999

bd96

(bd96) eIF-3_zeta
0.8948

4372

hypothetical protein
0.8918

21397

Nop52 superfamily
0.89

31415

hypothetical protein
0.8851

21305

hypothetical protein
0.8815

268714

TypA_BipA
0.8799

34413

RRM_ABT1_like
0.8789

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a... cl00268 573.762 0 246 - 580 specific 238398
class_II_aaRS-like_core superfamily Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA... - 573.762 0 246 - 580 superfamily 260313
LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes... cl19106 156.098 3.33E-45 131 - 243 specific 239817
Asp_Lys_Asn_RS_N superfamily Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (... - 156.098 3.33E-45 131 - 243 superfamily 267459
PLN02502 lysyl-tRNA synthetase - 922.851 0 23 - 582 multi-dom 215278

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_42289 PHATRDRAFT_42289 168292 234761 426543 Cre03.g160500.t1.2 AT3G11710.1 551244

KEGG

KEGG description KEGG Pathway
Aminoacyl-tRNA biosynthesis map00970

GO Terms

GO:0004815 GO:0005524 GO:0006422 GO:0004824 GO:0006430 GO:0004812 GO:0005737 GO:0006418 GO:0003676 -

GO:0004815

aspartate-tRNA ligase activity

Details: 
Catalysis of the reaction: ATP + L-aspartate + tRNA(Asp) = AMP + diphosphate + L-aspartyl-tRNA(Asp).
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006422

aspartyl-tRNA aminoacylation

Details: 
The process of coupling aspartate to aspartyl-tRNA, catalyzed by aspartyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO Category: 
BP

GO:0004824

lysine-tRNA ligase activity

Details: 
Catalysis of the reaction: ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys).
GO Category: 
MF

GO:0006430

lysyl-tRNA aminoacylation

Details: 
The process of coupling lysine to lysyl-tRNA, catalyzed by lysyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO Category: 
BP

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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