34413 RRM_ABT1_likeThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
34413	chr_5	RRM_ABT1_like	856521	857420	-	RRM_ABT1_like

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449601	Thaps34413.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0221

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0230	0.24	0.00011 150

Most Highly Correlated Transcripts

bd1709 (bd1709) NA 0.9615	bd96 (bd96) eIF-3_zeta 0.9442	31415 hypothetical protein 0.9397	10853 hypothetical protein 0.9389	268598 COG1094 0.9357	6835 DUF947 0.9336
21397 Nop52 superfamily 0.9334	41419 (RT4) RpsD 0.9331	262775 RBFA 0.9322	24217 hypothetical protein 0.9293

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RRM_ABT1_like		RNA recognition motif found in activator of basal transcription 1 (ABT1) and similar proteins; This...	cl17169	140.42	1.80E-41	99 - 196	specific	240709
RRM_SF superfamily		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	-	140.42	1.80E-41	99 - 196	superfamily	266524

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
22951	PHATRDRAFT_5424	PHATRDRAFT_5424	223935	188124	211403	Cre06.g264500.t1.2	AT3G56510.2	284998

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003676 -

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