29728 NADB_Rossmann superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
29728 chr_12 NADB_Rossmann superfamily 577464 579300 + NADB_Rossmann superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7445840 Thaps29728.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0035

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0059
 0.44

Most Highly Correlated Transcripts

bd690

(bd690) NA
0.9308

bd1801

(bd1801) NA
0.8953

bd738

(bd738) NA
0.8941

bd737

(bd737) NA
0.8925

bd415

(bd415) arom_aa_hydroxylase superfamily
0.881

28865

AarF
0.8609

bd410

(bd410) HNHc
0.8601

bd1934

(bd1934) NA
0.8591

bd1808

(bd1808) NA
0.8569

bd643

(bd643) NA
0.8526

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NADB_Rossmann superfamily Rossmann-fold NAD(P)(+)-binding proteins; A large family of proteins that share a Rossmann-fold NAD... - 427.523 2.92E-148 71 - 387 superfamily 263925
WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate... - 257.178 4.96E-82 71 - 391 multi-dom 223528

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_34716 PHATRDRAFT_34716 227097 237283 Not available Not available Not available 356174

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003824 GO:0009225 GO:0005975 GO:0009045 GO:0016857 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0009225

nucleotide-sugar metabolic process

Details: 
The cellular chemical reactions and pathways involving nucleotide-sugars, any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
GO Category: 
BP

GO:0005975

carbohydrate metabolic process

Details: 
The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO Category: 
BP

GO:0009045

xylose isomerase activity

Details: 
Catalysis of the reaction: D-xylose = D-xylulose.
GO Category: 
MF

GO:0016857

racemase and epimerase activity, acting on carbohydrates and derivatives

Details: 
Catalysis of a reaction that alters the configuration of one or more chiral centers in a carbohydrate molecule.
GO Category: 
MF

Add comment

Log in to post comments