29782 (eIF6) IF6
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
29782 chr_13 (eIF6) IF6 100166 101338 + IF6

Synonyms

NCBI ID Ensembl Genomes exon ID
7450555 Thaps29782.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0240

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0233
 0.34

Most Highly Correlated Transcripts

4372

hypothetical protein
0.9116

bd1709

(bd1709) NA
0.9111

bd1667

(bd1667) Mpp10
0.911

21929

COG0116
0.898

23393

hypothetical protein
0.8906

268443

SAICAR_synt_Sc
0.8789

35164

acolac_lg
0.8763

bd96

(bd96) eIF-3_zeta
0.8704

261893

Ofd1_CTDD
0.8663

268596

CBF
0.8654

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two... cl00241 318.46 1.03E-109 2 - 222 specific 238292
IF6 superfamily Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two... - 318.46 1.03E-109 2 - 222 superfamily 260293

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_24493 PHATRDRAFT_24493 272795 307015 114121 Cre13.g585150.t1.2 AT3G55620.1 322344

KEGG

KEGG description KEGG Pathway
Ribosome biogenesis in eukaryotes map03008

GO Terms

GO:0003743 GO:0006413 -

GO:0003743

translation initiation factor activity

Details: 
Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO Category: 
MF

GO:0006413

translational initiation

Details: 
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.
GO Category: 
BP

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