3026 PseudoU_synth superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
3026 chr_2 PseudoU_synth superfamily 2563239 2565647 + PseudoU_synth superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7452126 Thaps3026.3, Thaps3026.1, Thaps3026.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0269

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0286
 0.31

Most Highly Correlated Transcripts

586

PTZ00018
0.8222

24980

hypothetical protein
0.81

5236

DUF819 superfamily
0.7609

23897

hypothetical protein
0.7362

36650

hypothetical protein
0.7314

10282

hypothetical protein
0.7286

25161

hypothetical protein
0.7285

21769

Methyltransf_21 superfamily
0.7249

bd1071

(bd1071) NA
0.7176

3049

hypothetical protein
0.7128

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 106.265 9.27E-26 158 - 391 superfamily 260207
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 106.265 9.27E-26 158 - 391 superfamily 260207

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_35424 PHATRDRAFT_35424 150793 320350 74640 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0006396 GO:0009982 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0009982

pseudouridine synthase activity

Details: 
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
GO Category: 
MF

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