30620 Cfa
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
30620 chr_20 Cfa 647712 648924 + Cfa

Synonyms

NCBI ID Ensembl Genomes exon ID
7443628 Thaps30620.2, Thaps30620.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0205

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0238
 0.33

Most Highly Correlated Transcripts

bd1081

(bd1081) NA
0.9265

bd463

(bd463) Aa_trans superfamily
0.9149

bd439

(bd439) POLBc_alpha
0.9144

bd1893

(bd1893) NA
0.9129

25116

(PGK5) Phosphoglycerate_kinase
0.9107

bd1173

(bd1173) S_TKc
0.9075

9467

hypothetical protein
0.9071

38266

(GPI1) pgi
0.8996

bd950

(bd950) NA
0.8966

264007

NAD_binding_10
0.8914

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer... - 172.049 4.68E-51 1 - 315 multi-dom 225139

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_48517 PHATRDRAFT_48517 228809 67574 437566 Cre09.g398700.t1.2 AT4G33110.2 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008757 GO:0008610 GO:0008825 -

GO:0008757

S-adenosylmethionine-dependent methyltransferase activity

Details: 
Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate.
GO Category: 
MF

GO:0008610

lipid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
GO Category: 
BP

GO:0008825

cyclopropane-fatty-acyl-phospholipid synthase activity

Details: 
Catalysis of the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid = S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid.
GO Category: 
MF

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