30919 Longin
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
30919 chr_1 Longin 2863578 2864437 + Longin

Synonyms

NCBI ID Ensembl Genomes exon ID
7452574 Thaps30919.1, Thaps30919.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0077

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0086
 0.47

Most Highly Correlated Transcripts

37988

(ARF1) Ras_like_GTPase superfamily
0.8696

25677

MgtE superfamily
0.8467

5496

hypothetical protein
0.8431

34498

VTC1
0.8313

262856

Tryp_SPc
0.8299

21768

hypothetical protein
0.828

35728

FtsZ_type1
0.826

34855

Abhydrolase_5
0.8244

5717

(Tp_CBF/NF2) H4 superfamily
0.8221

4655

EFh
0.8214

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Longin superfamily Regulated-SNARE-like domain; Longin is one of the approximately 26 components required for... - 91.8522 5.33E-24 35 - 124 superfamily 258059
Longin superfamily Regulated-SNARE-like domain; Longin is one of the approximately 26 components required for... - 91.8522 5.33E-24 35 - 124 superfamily 258059
Synaptobrevin superfamily Synaptobrevin; Synaptobrevin. - 58.7048 5.66E-12 137 - 196 superfamily 250253
Synaptobrevin superfamily Synaptobrevin; Synaptobrevin. - 58.7048 5.66E-12 137 - 196 superfamily 250253
SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion] - 93.262 2.20E-23 5 - 200 multi-dom 227472

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54066 PHATRDRAFT_54066 178992 196307 236388 Cre12.g554700.t1.2 AT1G11890.1 529447

KEGG

KEGG description KEGG Pathway
Phagosome map04145

GO Terms

GO:0016021 GO:0016192 -

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0016192

vesicle-mediated transport

Details: 
A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO Category: 
BP

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