4655 EFh
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
4655 chr_4 EFh 1578245 1580308 - EFh

Synonyms

NCBI ID Ensembl Genomes exon ID
7443708 Thaps4655.1, Thaps4655.2, Thaps4655.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0176

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0010
 0.38

Most Highly Correlated Transcripts

12899

AAA
0.9267

bd789

(bd789) ABC_ATPase superfamily
0.8928

bd1161

(bd1161) NA
0.8832

bd1662

(bd1662) TIGR00367
0.8732

262287

hypothetical protein
0.8648

20651

MATE_like superfamily
0.8611

bd1893

(bd1893) NA
0.8583

260875

COG2220
0.8582

8051

PLN02517 superfamily
0.8563

24525

hypothetical protein
0.8563

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
EFh superfamily EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal... - 63.3357 1.81E-12 262 - 319 superfamily 238008
EFh superfamily EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal... - 63.3357 1.81E-12 262 - 319 superfamily 238008
ANK superfamily ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of... - 64.7122 1.97E-12 479 - 551 superfamily 238125
ANK superfamily ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of... - 64.7122 1.97E-12 479 - 551 superfamily 238125

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47788 PHATRDRAFT_47788 252005 Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0016021 GO:0016192 GO:0005509 -

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0016192

vesicle-mediated transport

Details: 
A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO Category: 
BP

GO:0005509

calcium ion binding

Details: 
Interacting selectively and non-covalently with calcium ions (Ca2+).
GO Category: 
MF

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