31110 (Tp_CSF2) CSP_CDS
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31110 chr_1 (Tp_CSF2) CSP_CDS 311731 312276 + CSP_CDS

Synonyms

NCBI ID Ensembl Genomes exon ID
7446797 Thaps31110.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0029

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0117
 0.49

Most Highly Correlated Transcripts

bd466

(bd466) cytochrome_b_C
0.9187

bd1313

(bd1313) psbH
0.9099

bd1304

(bd1304) Ycf4
0.9089

bd1319

(bd1319) ycf16
0.9039

270222

0.9019

bd1360

(bd1360) ycf24
0.896

bd1720

(bd1720) ftsH
0.8933

bd1387

(bd1387) psbE
0.8898

bd2073

(bd2073) psbB
0.881

bd1380

(bd1380) ycf39
0.8791

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes,... cl09927 72.9966 1.99E-17 78 - 142 specific 239905
S1_like superfamily S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated... - 72.9966 1.99E-17 78 - 142 superfamily 263921

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0006355 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

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