31128 (lhcx5) Chloroa_b-bind
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31128 chr_1 (lhcx5) Chloroa_b-bind 2849138 2850266 - Chloroa_b-bind

Synonyms

NCBI ID Ensembl Genomes exon ID
7446812 Thaps31128.4, Thaps31128.2, Thaps31128.3, Thaps31128.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0029

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0237
 0.26

Most Highly Correlated Transcripts

bd1403

(bd1403) NA
0.9835

bd1342

(bd1342) psaL
0.9826

bd1306

(bd1306) NA
0.9824

bd1820

(bd1820) Fasciclin
0.9735

bd1304

(bd1304) Ycf4
0.9704

bd1387

(bd1387) psbE
0.9696

bd1645

(bd1645) tpt
0.9657

bd1160

(bd1160) Chloroa_b-bind superfamily
0.9628

bd1350

(bd1350) psaF
0.9575

bd1863

(bd1863) NA
0.9556

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Chloroa_b-bind Chlorophyll A-B binding protein; Chlorophyll A-B binding protein. cl02879 127.038 3.71E-36 96 - 240 specific 249913
Chloroa_b-bind superfamily Chlorophyll A-B binding protein; Chlorophyll A-B binding protein. - 127.038 3.71E-36 96 - 240 superfamily 261492

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 271005 283956 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0009765 GO:0016020 -

GO:0009765

photosynthesis, light harvesting

Details: 
Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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