31266 IPP_Isomerase
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31266 chr_1 IPP_Isomerase 133157 134271 - IPP_Isomerase

Synonyms

NCBI ID Ensembl Genomes exon ID
7449793 Thaps31266.2, Thaps31266.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0122

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0008
 0.44

Most Highly Correlated Transcripts

1381

hypothetical protein
0.8773

13448

Sec1
0.8758

264670

Thioredoxin_like superfamily
0.875

264005

Glyco_hydrolase_16 superfamily
0.8671

42646

PRK04342
0.8651

21220

KU superfamily
0.8571

264598

AAA
0.8571

8778

(PDHB1) PLN02683
0.8566

268581

hypothetical protein
0.8551

37497

cysE
0.8549

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key... cl00447 197.402 4.91E-62 101 - 291 specific 239218
Nudix_Hydrolase superfamily Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes... - 197.402 4.91E-62 101 - 291 superfamily 260427

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12972 PHATRDRAFT_12972 142070 156063 Not available Cre11.g467544.t1.1 AT5G16440.1 514370

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0004452 GO:0008299 -

GO:0004452

isopentenyl-diphosphate delta-isomerase activity

Details: 
Catalysis of the reaction: isopentenyl diphosphate = dimethylallyl diphosphate.
GO Category: 
MF

GO:0008299

isoprenoid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
GO Category: 
BP

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