31569 (TUB3) PLN00220
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
31569 chr_1 (TUB3) PLN00220 2258934 2260750 + PLN00220
NCBI ID Ensembl Genomes exon ID
7449027 Thaps31569.2, Thaps31569.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0082
Normalized Mean Residue
Thaps_bicluster_0134
0.26
(bd439) POLBc_alpha
0.9784
(bd1983) RecA-like_NTPases superfamily
0.9623
(bd843) NA
0.9495
(bd950) NA
0.948
(bd1214) KISc_C_terminal
0.9411
(bd529) SNF2_N
0.9251
(bd758) NA
0.9171
(bd1893) NA
0.9127
(bd1081) NA
0.9099
(bd211) Maf_Ham1 superfamily
0.9048
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and... cl10017 852.338 0 2 - 427 specific 100016
Tubulin_FtsZ superfamily Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well... - 852.338 0 2 - 427 superfamily 263945
PLN00220 tubulin beta chain; Provisional - 891.868 0 1 - 445 multi-dom 215107
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available
KEGG description KEGG Pathway
Phagosome map04145
GO:0005525 GO:0005737 GO:0005198 GO:0005874 GO:0007018 GO:0003924 GO:0043234 GO:0051258 -

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

structural molecule activity

Details: 
The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell.
GO Category: 
MF

microtubule

Details: 
Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.
GO Category: 
CC

microtubule-based movement

Details: 
A microtubule-based process that is mediated by motor proteins and results in the movement of organelles, other microtubules, or other particles along microtubules.
GO Category: 
BP

GTPase activity

Details: 
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO Category: 
MF

protein complex

Details: 
Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or other small molecules.
GO Category: 
CC

protein polymerization

Details: 
The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein.
GO Category: 
BP
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